PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462888082
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 305aa    MW: 34636.3 Da    PI: 6.0057
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462888082genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.75e-301889103
                   HHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   ++ d++++ ++sw     gn+fvv+d++e+a ++Lp++Fkh nfaSFvRQLn+YgF+kv+ ++         weF+h+sF +g+k+ll++ikr++ +
     462888082   1 MVADPATDAVVSWGpgGAGNTFVVWDPRELAARLLPRFFKHANFASFVRQLNIYGFRKVNPDR---------WEFAHESFLAGQKHLLKNIKRRRPS 88 
                   899***********55556*****************************************999.........*********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-41185IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-26185IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-27185IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-30185IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-83446IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403559IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-84759IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVADPATDAV VSWGPGGAGN TFVVWDPREL AARLLPRFFK HANFASFVRQ LNIYGFRKVN  60
PDRWEFAHES FLAGQKHLLK NIKRRRPSKH QLESQSRTES RVCLGQPEDI REVQSLKRDR  120
ASLVAEVTML RQKYNRCKSV LLAMEERIRD NERKQQLIVA FFAKVLSNPE FVQRLLINRA  180
RNKELCGTVK RQRLMASEEQ LVDAPLKNGV EVASSAVKAA ISEGSSDDSV AGTDVKHETV  240
PEWNHQIINN ICDDVWEELD AIPGTGVDQE DIATDSFDVE ELTGRPCGWV DDCPFLVEPM  300
QFVEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2318827123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884LKNIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982151.11e-143PREDICTED: heat stress transcription factor A-6a-like
SwissprotQ657C01e-141HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLK4ALG81e-143K4ALG8_SETIT; Uncharacterized protein
STRINGSi039749m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-64heat shock transcription factor A2